BlastProfiler: a sequence profile generator

Parse and clean up Psi-Blast output to generate a representive sequence profile

INPUT VALUES
   Email 
  Paste your protein sequence in the window ... (use one letter codes) 



    OR upload your sequence file 
  Perform a PSI-BLAST search?     Database      Iteration       OR upload PSI-BLAST output file 

SEQUENCE HIT FILTERING
   Minimum sequence identity between each hit and query  % (default: 30) 
   Maximum sequence identity between each hit and query  % (default: 90) 
   Maximum e-value for each hit  (default: 1x10-4)  
   Minimum percentage of sequence overlap between each hit and query  % (default: 75)  
   Minimum length of sequence overlap between each hit and query  residues (default: 30)  
   Maximum sequence identity between pairs of aligned sequence hits  % (range: 40-100; default: 90)  

OUTPUT OPTIONS
  Raw sequences     Format     Number of columns for alignment output  (default: 70)  
  Alignment     Format     Number of columns for alignment output  (default: 70)  
  Realign sequences with CLUSTALW     Format